2016 | AMR Networks/Working Groups | AMR RDT | Nature Reviews Microbiology, 2018.
Developmental roadmap for antimicrobial susceptibility testing systems |
2016 | AMR Networks/Working Groups | AMR RDT | European Journal of Clinical Microbiology & Infectious Diseases, 2019.
The successful uptake and sustainability of rapid infectious disease and antimicrobial resistance point-of-care testing requires a complex ‘mix-and-match’ implementation package |
2016 | AMR Networks/Working Groups | Appropriate use of antibiotics: the role of CAM treatment strategies | Evidence-based Complementary and Alternative Medicine, 2019.
The Contribution of Complementary and Alternative Medicine to Reduce Antibiotic Use: A Narrative Review of Health Concepts, Prevention, and Treatment Strategies |
2016 | AMR Networks/Working Groups | Appropriate use of antibiotics: the role of CAM treatment strategies | BMJ Open, 2018.
Do NHS GP surgeries employing GPs additionally trained in integrative or complementary medicine have lower antibiotic prescribing rates? Retrospective cross-sectional analysis of national primary care prescribing data in England in 2016 |
2016 | AMR Networks/Working Groups | BEAM Alliance | BEAM Alliance Position Paper, 2017.
Key Guidelines to implement effective measures toward SMEs to revive the antibacterial R&D field |
2016 | AMR Networks/Working Groups | Behavioural Approaches to Antibiotic Stewardship Programs | Clinical Microbiology and Infection, 2018.
Prioritizing research areas for antibiotic stewardship programmes in hospitals: a behavioural perspective |
2016 | AMR Networks/Working Groups | Behavioural Approaches to Antibiotic Stewardship Programs | Journal of Antimicrobial Chemotherapy, 2020.
A behavioural approach to specifying interventions: what insights can be gained for the reporting and implementation of interventions to reduce antibiotic use in hospitals? |
2017 | AMR Networks/Working Groups | Behavioural Approaches to Antibiotic Stewardship Programs | Front. Sociol, 2020.
Barriers and Facilitators to Implementation of Antibiotic Stewardship Programmes in Hospitals in Developed Countries |
2016 | AMR Networks/Working Groups | Consensus group on the design, analysis and reporting of antibiotic stewardship trials | Clinical Microbiology and Infection, 2019.
Optimizing design of research to evaluate antibiotic stewardship interventions: consensus recommendations of a multinational working group |
2016 | AMR Networks/Working Groups | FARB - Flies (Diptera: Muscidae) and the spread of antimicrobial resistant bacteria | Travel Medicine and Infectious Disease, 2018.
The role of ‘filth flies’ in the spread of antimicrobial resistance |
2016 | AMR Networks/Working Groups | PHAGEFORWARD | Viruses, 2018.
Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains |
2016 | AMR Networks/Working Groups | VetCAST | http://www.eucast.org/ast_of_veterinary_pathogens/ |
2016 | AMR Networks/Working Groups | VetCAST | Frontiers in Microbiology, 2017.
En Route towards European Clinical Breakpoints for Veterinary Antimicrobial Susceptibility Testing: A Position Paper Explaining the VetCAST Approach |
2015 | Antimicrobial Resistance through the JPIAMR | ABIMMUNE | European Journal of Pharmaceutical Sciences, 2019.
High voriconazole target-site exposure after approved sequence dosing due to nonlinear pharmacokinetics assessed by long-term microdialysis |
2015 | Antimicrobial Resistance through the JPIAMR | ABIMMUNE | Frontiers in Immunology, 2019.
Therapeutic Synergy Between Antibiotics and Pulmonary Toll-Like Receptor 5 Stimulation in Antibiotic-Sensitive or -Resistant Pneumonia |
2015 | Antimicrobial Resistance through the JPIAMR | ABIMMUNE | Drug Metabolism Reviews, 2019.
Novel insights into the complex pharmacokinetics of voriconazole: a review of its metabolism |
2015 | Antimicrobial Resistance through the JPIAMR | ABIMMUNE | Journal of Clinical Medicine, 2020.
Linezolid Concentrations in Plasma and Subcutaneous Tissue are Reduced in Obese Patients, Resulting in a Higher Risk of Underdosing in Critically Ill Patients: A Controlled Clinical Pharmacokinetic Study |
2015 | Antimicrobial Resistance through the JPIAMR | ABIMMUNE | Talanta, 2019.
A rapid, simple and sensitive liquid chromatography tandem mass spectrometry assay to determine amoxicillin concentrations in biological matrix of little volume |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Clinical Microbiology and Infection, 2018.
Automated time-lapse microscopy a novel method for screening of antibiotic combination effects against multidrug-resistant Gram-negative bacteria |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Clinical Microbiology and Infection, 2018.
Semi-mechanistic pharmacokinetic–pharmacodynamic modelling of antibiotic drug combinations |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Clinical Microbiology and Infection, 2018.
PK/PD characterization of combined antimicrobial agents: a real challenge and an urgent need |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | International Journal of Antimicrobial Agents, 2019.
An alternative strategy for combination therapy: Interactions between polymyxin B and non-antibiotics |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Journal of Antimicrobial Chemotherapy, 2019.
Population pharmacokinetics of piperacillin in febrile children receiving cancer chemotherapy: the impact of body weight and target on an optimal dosing regimen |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Antimicrobial Agents and Chemotherapy, 2020.
Extension of Pharmacokinetic/Pharmacodynamic Time-Kill Studies To Include Lipopolysaccharide/Endotoxin Release from Escherichia coli Exposed to Cefuroxime |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Molecular Pharmaceutics, 2020.
Model-Informed Drug Development in Pulmonary Delivery: Semimechanistic Pharmacokinetic–Pharmacodynamic Modeling for Evaluation of Treatments against Chronic Pseudomonas aeruginosa Lung Infections |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Antimicrobial Agents and Chemotherapy, 2020.
Efficacy of Antibiotic Combinations against MultidrugResistant Pseudomonas aeruginosa in Automated Time-Lapse |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Clinical Microbiology and Infection, 2020.
Evaluation of polymyxin B in combination with 13 other antibiotics against carbapenemase-producing Klebsiella pneumoniae in time-lapse microscopy and time-kill experiments |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | International Journal of Antimicrobial Agents, 2020.
Combination of polymyxin B and minocycline against multidrug-resistant Klebsiella pneumoniae: interaction quantified by pharmacokinetic/pharmacodynamic modelling from in vitro data |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Clinical Microbiology and Infection, 2020.
Semi-mechanistic PK/PD modelling of combined polymyxin B and minocycline against a polymyxin-resistant strain of Acinetobacter baumannii |
2015 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | Clinical Microbiology and Infection, 2020.
Population pharmacokinetics of colistin and the relation to survival in critically ill patients infected with colistin susceptible and carbapenem-resistant bacteria |
2016 | Antimicrobial Resistance through the JPIAMR | CO-ACTION | International Journal of Antimicrobial Agents, 2020.
Pharmacodynamics of immune response biomarkers of interest for evSaluation of treatment effects in bacterial infections |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Molecular Microbiology, 2017.
Silver potentiates aminoglycoside toxicity by enhancing their uptake |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Nature, 2018.
Species-specific activity of antibacterial drug combinations |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Nucleic Acid Research, 2018.
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39 |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | bioRxiv, 2018.
RocS drives chromosome segregation and nucleoid occlusion in Streptococcus pneumoniae |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Nucleic Acids Research, 2018.
High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Cell Reports, 2018.
Antibiotic-induced cell chaining triggers pneumococcal competence by reshaping quorum sensing to autocrine signaling |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Genes, 2019.
Three new integration vectors and fluorescent proteins for use in the opportunistic human pathogen Streptococcus pneumoniae |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | CPT:Pharmacometrics & Systemics Pharmacology, 2017.
Translational Pharmacometric Evaluation of Typical Antibiotic Broad‐Spectrum Combination Therapies Against Staphylococcus Aureus Exploiting In Vitro Information |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | bioRxiv, 2020.
Dissecting the collateral damage of antibiotics on gut microbes |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Cell Host & Microbe, 2020.
Proton Motive Force Disruptors Block Bacterial Competence and Horizontal Gene Transfer |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Nature Microbiology, 2019.
RocS drives chromosome segregation and nucleoid protection in Streptococcus pneumoniae |
2015 | Antimicrobial Resistance through the JPIAMR | ABIMMUNE | Pharmaceutical Research, 2021. Which Analysis Approach Is Adequate to Leverage Clinical Microdialysis Data? A Quantitative Comparison to Investigate Exposure and Reponse Exemplified by Levofloxacin. |
2015 | Antimicrobial Resistance through the JPIAMR | ABIMMUNE | Respiratory Research, 2021. Post-treatment with the PPAR-γ agonist pioglitazone inhibits inflammation and bacterial growth during Klebsiella pneumonia |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | ARMIS | Biointerface Research in Applied Chemistry, 2019.
Prevalence of vancomycin resistance phenotypes among Enterococcus species isolated from |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | ImpresU | JAMDA, 2020.
Antibiotic Stewardship in European Nursing Homes: Experiences From the Netherlands, Norway, Poland, and Sweden |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | INART | ACCESS MICROBIOLOGY, 2019.
Occurrence of extended-spectrum β-lactamase (ESBL)/AmpC producing bacteria in wastewater treatment plant effluent |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | INART | Antibiotics and Antimicrobial Resistance Genes, 2020.
Treatment Technologies for Removal of Antibiotics, Antibiotic Resistance Bacteria and Antibiotic-Resistant Genes |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | AB-Assistant | BMJ Open 2020.
Study protocol for an international, multicentre stepped-wedge cluster randomised trial to evaluate the impact of a digital antimicrobial stewardship smartphone application |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | RESILIENCE | The Lancet Infectious Diseases, 2020.
Evidence for action: a One Health learning platform on interventions to tackle antimicrobial resistance |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | ASB | J Antibiotics, 2020.
Industry incentives and antibiotic resistance: an introduction to the antibiotic susceptibility bonus |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | INART | Frontiers in Microbiology, 2021. Antibiotics and Antibiotic Resistance Genes in Animal Manure – Consequences of Its Application in Agriculture. |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | ASB | Frontiers in Medicine, 2021. Surveillance of Resistance to New Antibiotics in an Era of Limited Treatment Options. |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | REDUCEAMU | Frontiers in Microbiology, 2021. Exploring the Antibiotic Resistance Burden in Livestock, Livestock Handlers and Their Non-Livestock Handling Contacts: A One Health Perspective |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | REDUCEAMU | Front. Vet. Sci., 2021. Geographic Drivers of Antimicrobial Use and Resistance in Pigs in Khon Kaen Province, Thailand |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | ExcludeMRSA | Irish Veterinary Journal, 2021. Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) prevalence in humans in close contact with animals and measures to reduce on-farm colonisation |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | ExcludeMRSA | mSystems, 2021. Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | AMResilience | BMC Infectious Diseases, 2021. Characterizing social-ecological context and success factors of antimicrobial resistance interventions across the One Health spectrum: analysis of 42 interventions targeting E. coli |
2014 | InnovaResistance | DesInMBL | Journal of Enzyme Inhibition and Medicinal Chemistry, 2017.
Beta-lactamase database (BLDB) – structure and function |
2014 | InnovaResistance | DesInMBL | International Journal of Antimicrobial Agents, 2017.
Performance of the Xpert® Carba-R v2 in the daily workflow of a hygiene unit in a country with a low prevalence of carbapenemase-producing Enterobacteriaceae |
2014 | InnovaResistance | DesInMBL | Proteins: Structure, Function, and Bioinformatics, 2016.
Prior knowledge or freedom of interpretation? A critical look at a recently published classification of “novel” Zn binding sites |
2014 | InnovaResistance | DesInMBL | Journal of Computer-Aided Molecular Design, 2018.
Blinded evaluation of farnesoid X receptor (FXR) ligands binding using molecular docking and free energy calculations |
2014 | InnovaResistance | DesInMBL | Journal of Computer-Aided Molecular Design, 2018.
SAMPL6: calculation of macroscopic pKa values from ab initio quantum mechanical free energies |
2014 | InnovaResistance | DesInMBL | Journal of Computer-Aided Molecular Design, 2016.
Prediction of cyclohexane-water distribution coefficients for the SAMPL5 data set using molecular dynamics simulations with the OPLS-AA force field |
2014 | InnovaResistance | DesInMBL | Journal of Computer-Aided Molecular Design, 2019.
Blinded evaluation of cathepsin S inhibitors from the D3RGC3 dataset using molecular docking and free energy calculations |
2014 | InnovaResistance | DesInMBL | The Journal of Molecular Diagnotics, 2020.
Evaluation of the BD MAX Check-Points CPO Assay for the Detection of Carbapenemase Producers Directly from Rectal Swabs |
2014 | InnovaResistance | DesInMBL | Journal of Antimicrobial Chemotherapy, 2019.
Evaluation of the RESIST-4 K-SeT assay, a multiplex immunochromatographic assay for the rapid detection of OXA-48-like, KPC, VIM and NDM carbapenemases |
2014 | InnovaResistance | DesInMBL | ACS Infectious Diseases, 2019.
Genetic, Biochemical, and Structural Characterization of CMY-136 β-Lactamase, a Peculiar CMY-2 Variant |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2019.
False-Positive Carbapenem-Hydrolyzing Confirmatory Tests Due to ACT-28, a Chromosomally Encoded AmpC with Weak Carbapenemase Activity from Enterobacter kobei |
2014 | InnovaResistance | DesInMBL | Journal of Antimicrobial Chemotherapy, 2019.
SME-4-producing Serratia marcescens from Argentina belonging to clade 2 of the S. marcescens phylogeny |
2014 | InnovaResistance | DesInMBL | Journal of Antimicrobial Chemotherapy, 2019.
Unravelling ceftazidime/avibactam resistance of KPC-28, a KPC-2 variant lacking carbapenemase activity |
2014 | InnovaResistance | DesInMBL | Journal of Clinical Microbiology, 2019.
Evaluation of the Amplidiag CarbaR+MCR Kit for Accurate Detection of Carbapenemase-Producing and Colistin-Resistant Bacteria |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2018.
Genetic and Biochemical Characterization of OXA-535, a Distantly Related OXA-48-Like β-Lactamase |
2014 | InnovaResistance | DesInMBL | Drug Resistance Updates, 2018.
A close look onto structural models and primary ligands of metallo-β-lactamases |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2017.
Molecular Characterization of OXA-198 Carbapenemase-Producing Pseudomonas aeruginosa Clinical Isolates |
2014 | InnovaResistance | DesInMBL | Journal of Antimicrobial Chemotherapy, 2018.
A multiplex lateral flow immunoassay for the rapid identification of NDM-, KPC-, IMP- and VIM-type and OXA-48-like carbapenemase-producing Enterobacteriaceae |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2018.
Genetic and Biochemical Characterization of OXA-519, a Novel OXA-48-Like β-Lactamase |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2018.
Diversity of Carbapenemase-Producing Escherichia coli Isolates |
2014 | InnovaResistance | DesInMBL | Journal of Clinical Microbiology, 2019.
Evaluation of the Amplidiag CarbaR+MCR Kit for Accurate Detection of Carbapenemase-Producing and Colistin-Resistant Bacteria |
2014 | InnovaResistance | DesInMBL | Journal of Clinical Microbiology, 2018.
Evaluation of the Amplidiag CarbaR+VRE Kit for Accurate Detection of Carbapenemase-Producing Bacteria |
2014 | InnovaResistance | DesInMBL | Frontiers in Microbiology, 2018.
Transcriptional Landscape of a blaKPC-2 Plasmid and Response to Imipenem Exposure in Escherichia coli TOP10 |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2018.
Proposing Kluyvera georgiana as the Origin of the Plasmid-Mediated Resistance Gene fosA4 |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2018.
Complete Sequence of the IncA/C1 Plasmid pCf587 Carrying blaPER-2 from Citrobacter freundii |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2017.
Comparison of Two Phenotypic Algorithms To Detect Carbapenemase-Producing Enterobacteriaceae |
2014 | InnovaResistance | DesInMBL | Journal of Antimicrobial Chemotherapy, 2017.
Prospective evaluation of the OKN K-SeT assay, a new multiplex immunochromatographic test for the rapid detection of OXA-48-like, KPC and NDM carbapenemases |
2014 | InnovaResistance | DesInMBL | Antimicrobial Agents and Chemotherapy, 2016.
First Occurrence of OXA-72-Producing Acinetobacter baumannii in Serbia |
2014 | InnovaResistance | DesInMBL | Journal of Computer-Aided Molecular Design, 2020.
Prediction of octanol-water partition coefficients for the SAMPL6-logP molecules using molecular dynamics simulations with OPLS-AA, AMBER and CHARMM force fields |
2014 | InnovaResistance | DesInMBL | Frontiers in Microbiology, 2020.
Genetics of Acquired Antibiotic Resistance Genes in Proteus spp. |
2014 | InnovaResistance | DesInMBL | Current Drug Targets, 2016.
Structural and Functional Aspects of Class A Carbapenemases |
2014 | InnovaResistance | DesInMBL | Scientific Reports, 2020.
A single Proteus mirabilis lineage from human and animal sources: a hidden reservoir of OXA-23 or OXA-58 carbapenemases in Enterobacterales |
2014 | InnovaResistance | DesInMBL | International Journal of Biological Macromolecules.
2020. Flexible loops of New Delhi metallo-β-lactamase modulate its activity towards different substrates |
2014 | InnovaResistance | EVOBIOTIC | Nucleic Acids Research, 2015.
Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM) |
2014 | InnovaResistance | EVOBIOTIC | Nature Communications, 2015.
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products |
2014 | InnovaResistance | NAPCLI | Current Opinion in Microbiology, 2017.
The divisome at 25: the road ahead |
2014 | InnovaResistance | NAPCLI | mBio, 2018.
Structural analysis of the interaction between the bacterial cell division proteins FtsQ and FtsB |
2014 | InnovaResistance | NAPCLI | Molecular Microbiology, 2018.
Induced conformational changes activate the peptidoglycan synthase PBP1B |
2014 | InnovaResistance | NAPCLI | The Cell Surface, 2018.
Coupling of polymerase and carrier lipid phosphatase prevents product inhibition in peptidoglycan synthesis |
2014 | InnovaResistance | NAPCLI | Frontiers in Microbiology, 2019.
Recognition of Peptidoglycan Fragments by the Transpeptidase PBP4 From Staphylococcus aureus |
2014 | InnovaResistance | NAPCLI | Frontiers in Microbiology, 2018.
The Fluorescent D-Amino Acid NADA as a Tool to Study the Conditional Activity of Transpeptidases in Escherichia coli |
2014 | InnovaResistance | NAPCLI | mBio, 2019.
Peptidoglycan Remodeling Enables Escherichia coli To Survive Severe Outer Membrane Assembly Defect |
2014 | InnovaResistance | NAPCLI | Molecular Microbiology, 2017.
Peptidoglycan in obligate intracellular bacteria |
2014 | InnovaResistance | NAPCLI | Bio-protocol, 2018.
Bacterial Cell Wall Precursor Phosphatase Assays Using Thin-layer Chromatography (TLC) and High Pressure Liquid Chromatography (HPLC) |
2014 | InnovaResistance | NAPCLI | PNAS, 2018.
Copper inhibits peptidoglycan LD-transpeptidases suppressing β-lactam resistance due to bypass of penicillin-binding proteins |
2014 | InnovaResistance | NAPCLI | Frontiers in Cellular and Infection Microbiology, 2017.
AmiD Is a Novel Peptidoglycan Amidase in Wolbachia Endosymbionts of Drosophila melanogaster |
2014 | InnovaResistance | NAPCLI | eLife, 2016.
Factors essential for L,D-transpeptidase-mediated peptidoglycan cross-linking and β-lactam resistance in Escherichia coli |
2014 | InnovaResistance | NAPCLI | Chemistry A European Journal, 2018.
Critical Impact of Peptidoglycan Precursor Amidation on the Activity of l,d‐Transpeptidases from Enterococcus faecium and Mycobacterium tuberculosis |
2014 | InnovaResistance | NAPCLI | Journal of Biological Chemistry, 2018.
Structural and kinetic analyses of penicillin-binding protein 4 (PBP4)-mediated antibiotic resistance in Staphylococcus aureus |
2014 | InnovaResistance | NAPCLI | Structure, 2020.
Structure of the Peptidoglycan Synthase Activator LpoP in Pseudomonas aeruginosa |
2014 | InnovaResistance | NAPCLI | Nature Communications, 2019.
Structural Insight Into YcbB-mediated Beta-Lactam Resistance in Escherichia Coli |
2014 | InnovaResistance | NoTBSec | Journal of Biological Chemistry, 2016.
iniBAC induction Is Vitamin B12- and MutAB-dependent in Mycobacterium marinum |
2014 | InnovaResistance | NoTBSec | Plos Genetics, 2017.
Cell envelope stress in mycobacteria is regulated by the novel signal transduction ATPase IniR in response to trehalose |
2014 | InnovaResistance | NoTBSec | Plos Neglected Tropical Diseases, 2019.
Triple oral beta-lactam containing therapy for Buruli ulcer treatment shortening |
2014 | InnovaResistance | NoTBSec | Antimicrobial Agents and Chemotherapy, 2018.
Rifabutin Acts in Synergy and Is Bactericidal with Frontline Mycobacterium abscessus Antibiotics Clarithromycin and Tigecycline, Suggesting a Potent Treatment Combination |
2014 | InnovaResistance | NoTBSec | Antimicrobial Agents and Chemotherapy, 2017.
Antagonism between Front-Line Antibiotics Clarithromycin and Amikacin in the Treatment of Mycobacterium abscessus Infections Is Mediated by the whiB7 Gene |
2014 | InnovaResistance | NoTBSec | Molecular Microbiology, 2017.
Regulatory genes coordinating antibiotic‐induced changes in promoter activity and early transcriptional termination of the mycobacterial intrinsic resistance gene whiB7 |
2014 | InnovaResistance | NoTBSec | Scientific Reports 2016.
Repurposing clinically approved cephalosporins for tuberculosis therapy |
2014 | InnovaResistance | NoTBSec | PNAS, 2016.
Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria |
2014 | InnovaResistance | NoTBSec | Cellular Microbiology, 2017.
ESX‐1 and phthiocerol dimycocerosates of Mycobacterium tuberculosis act in concert to cause phagosomal rupture and host cell apoptosis |
2014 | InnovaResistance | NoTBSec | Nature Microbiology, 2018.
Mutations in ppe38 block PE_PGRS secretion and increase virulence of Mycobacterium tuberculosis |
2014 | InnovaResistance | NoTBSec | PNAS, 2018.
Mycobacterial ESX-1 secretion system mediates host cell lysis through bacterium contact-dependent gross membrane disruptions |
2014 | InnovaResistance | NoTBSec | Molecular Microbiology, 2016.
Discovery of the type VII ESX‐1 secretion needle? |
2014 | InnovaResistance | NoTBSec | Cell Reports, 2018.
Multiplexed Quantitation of Intraphagocyte Mycobacterium tuberculosis secrected proetien effectors |
2014 | InnovaResistance | NoTBSec | Cell Reports, 2017.
Recombinant BCG Expressing ESX-1 of Mycobacterium marinum Combines Low Virulence with Cytosolic Immune Signaling and Improved TB Protection |
2014 | InnovaResistance | NoTBSec | Nature REviews Microbiology, 2016.
ESX secretion systems: mycobacterial evolution to counter host immunity |
2014 | InnovaResistance | NoTBSec | Plos Pathogens, 2018.
RD5-mediated lack of PE_PGRS and PPE-MPTR export in BCG vaccine strains results in strong reduction of antigenic repertoire but little impact on protection |
2014 | InnovaResistance | NoTBSec | Plos One, 2015.
Benzoic Acid-Inducible Gene Expression in Mycobacteria |
2014 | InnovaResistance | NoTBSec | Infection and Immunity, 2018.
Genetic Variation/Evolution and Differential Host Responses Resulting from In-Patient Adaptation of Mycobacterium avium |
2014 | InnovaResistance | NPERDMDR | PLOS ONE, 2017.
Effective Control of Molds Using a Combination of Nanoparticles |
2014 | InnovaResistance | NPERDMDR | Journal of Nanobiotechnology, 2017.
Metal nanoparticles: understanding the mechanisms behind antibacterial activity |
2014 | InnovaResistance | NPERDMDR | Journal of Materials Chemistry B, 2016.
A one-step sonochemical synthesis of stable ZnO–PVA nanocolloid as a potential biocidal agent |
2014 | InnovaResistance | NPERDMDR | International Journal of Nanomedicine, 2016.
Ga@C-dots as an antibacterial agent for the eradication of Pseudomonas aeruginosa |
2014 | InnovaResistance | NPERDMDR | Chemistry and Physics of Lipids, 2019.
Physical states and thermodynamic properties of model gram-negative bacterial inner membranes |
2014 | InnovaResistance | NPERDMDR | Current Topics in Medicinal Chemistry, 2017.
Innovative Approaches for Controlling Clinically Relevant Biofilms: Current Trends and Future Prospects |
2014 | InnovaResistance | NPERDMDR | Journal of Applied Polymer Science, 2017.
Sonochemical synthesis and stabilization of concentrated antimicrobial silver‐chitosan nanoparticle dispersions |
2014 | InnovaResistance | NPERDMDR | ACS Appl. Mater. Interfaces, 2017.
Nanotransformation of Vancomycin Overcomes the Intrinsic Resistance of Gram-Negative Bacteria |
2014 | InnovaResistance | NPERDMDR | Process Biochemistry, 2017.
Immobilization of antimicrobial core-shell nanospheres onto silicone for prevention of Escherichia coli biofilm formation |
2014 | InnovaResistance | NPERDMDR | Nanomedicine: Nanotechnology, Biology and Medicine, 2016.
Escherichia coli and Pseudomonas aeruginosa eradication by nano-penicillin G |
2014 | InnovaResistance | NPERDMDR | Acta Biomaterialia, 2016.
Bacteria-responsive multilayer coatings comprising polycationic nanospheres for bacteria biofilm prevention on urinary catheters |
2014 | InnovaResistance | NPERDMDR | Ind. Eng. Chem. Res, 2017.
Hybrid Chitosan–Silver Nanoparticles Enzymatically Embedded on Cork Filter Material for Water Disinfection |
2014 | InnovaResistance | SENBIOTAR | Virology Journal, 2015.
Glycoside hydrolase family 32 is present in Bacillus subtilis phages |
2014 | InnovaResistance | SENBIOTAR | Drug Discovery Today: Technologies, 2018.
Automated assays for thermodynamic (equilibrium) solubility determination |
2014 | InnovaResistance | SENBIOTAR | Molecules, 2018.
In Silico and in Vitro-Guided Identification of Inhibitors of Alkylquinolone-Dependent Quorum Sensing in Pseudomonas aeruginosa |
2014 | InnovaResistance | SENBIOTAR | Journal of Medicinal Chemistry, 2018.
Pseudomonas aeruginosa Quorum Sensing Systems as Drug Discovery Targets: Current Position and Future Perspectives |
2014 | InnovaResistance | SENBIOTAR | Annals of the New York Academy of Sciences, 2019.
Genomics of antibiotic‐resistance prediction in Pseudomonas aeruginosa |
2014 | InnovaResistance | SENBIOTAR | Journal of Pharmaceutical Sciences, 2019.
Model-based drug development in pulmonary delivery: Pharmacokinetic analysis of novel drug candidates for treatment of Pseudomonas aeruginosa lung infection |
2014 | InnovaResistance | EVOBIOTIC | Research in Microbiology, 2020.
Escherichia coli O-antigen Capsule (Group 4) is Essential for Serum Resistance |
2014 | InnovaResistance | DesInMBL | European Journal of Medicinal Chemistry, 2021. Azetidinimines as a novel series of non-covalent broad-spectrum inhibitors of β-lactamases with submicromolar activities against carbapenemases KPC-2 (class A), NDM-1 (class B) and OXA-48 (class D) |
2014 | InnovaResistance | DesInMBL | Journal of Computer-Aided Molecular Design, 2021. Precise force-field-based calculations of octanol-water partition coefficients for the SAMPL7 molecules |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | bioRxiv, 2019.
Spatio-temporal control of DNA replication by the pneumococcal cell cycle regulator CcrZ |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | Molecular Microbiology, 2019.
BactMAP: an R package for integrating, analyzing and visualizing bacterial microscopy data |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | bioRxiv, 2020.
Exploration of bacterial bottlenecks and Streptococcus pneumoniae pathogenesis by CRISPRi-seq |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | bioRxiv, 2020.
Unbiased homeologous recombination during pneumococcal transformation allows for multiple chromosomal integration events |
2019 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | bioRxiv - June 2020.
Harnessing CRISPR-Cas9 for genome editing in Streptococcus pneumoniae |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | Nature Structural & Molecular Biology, 2020.
Structure of a proton-dependent lipid transporter involved in lipoteichoic acids biosynthesis |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | MicrobiologyOpen, 2020.
Penicillin‐binding protein PBP2a provides variable levels of protection toward different β‐lactams in Staphylococcus aureus RN4220 |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | FLAV4AMR | International Journal of Molecular Sciences, 2020.
Flavodoxins as Novel Therapeutic Targets against Helicobacter pylori and Other Gastric Pathogens |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | PNAS, 2020.
A widespread toxin−antitoxin system exploiting growth control via alarmone signaling |
2019 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | Nature Reviews Microbiology, 2020.
Target protection as a key antibiotic resistance mechanism |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RESET-ME | Angewandte Chemie International Edition, 2021. Large Peptide Permeation Through a Membrane Channel: Understanding Protamine Translocation Through CymA from Klebsiella Oxytoca |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | Explore | ChemMedChem, 2021. Fragment‐based drug discovery for RNA targets. |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | Nature Communications, 2021. Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens. |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | Nature Microbiology, 2021. CcrZ is a pneumococcal spatiotemporal cell cycle regulator that interacts with FtsZ and controls DNA replication by modulating the activity of DnaA |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | Molecular Cell, 2021. (p)ppGpp controls stringent factors by exploiting antagonistic allosteric coupling between catalytic domains |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | Nature Communications, 2021. Structural and mechanistic basis for translation inhibition by macrolide and ketolide antibiotics |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | Molecular Cell, 2021. RelA-SpoT Homolog toxins pyrophosphorylate the CCA end of tRNA to inhibit protein synthesis |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | bioRxiv, 2021. Structural basis for PoxtA-mediated resistance to Phenicol and Oxazolidinone antibiotics |
2018 | JPIAMR-VRI Network Call | CONNECT | Human Genetics, 2020.
Delineation of phenotypes and genotypes related to cohesin structural protein RAD21 |
2018 | JPIAMR-VRI Network Call | TRANSLOCATION-transfer | Microorganisms, 2020.
When Combined with Colistin, an Otherwise Ineffective Rifampicin–Linezolid Combination Becomes Active in Escherichia coli, Pseudomonas aeruginosa, and Acinetobacter baumannii |
2018 | JPIAMR-VRI Network Call | TRANSLOCATION-transfer | Expert Opinion on Drug Discovery, 2021. Future prospects for Antimicrobial peptide development: peptidomimetics and antimicrobial combinations. |
2018 | JPIAMR-VRI Network Call | VeRI BEAM | Drug Discovery Today, 2021. Improving the ability of antimicrobial susceptibility tests to predict clinical outcome accurately: adding metabolic evasion to the equation. |
2018 | JPIAMR-VRI Network Call | IRAADD | Nature Reviews Chemistry, 2021. Towards the sustainable discovery and development of new antibiotics |
2018 | Network Call on Surveillance | CoEval-AMR | Clinical Microbiology and Infection, 2020.
Evaluating integrated surveillance of antimicrobial resistance: experiences from use of three evaluation tools |
2018 | Network Call on Surveillance | ICALM | Intensive Care Medicine, 2019.
The association of cardiovascular failure with treatment for ventilator-associated lower respiratory tract infection |
2018 | Network Call on Surveillance | ICALM | Intensive Care Medicine, 2020.
Antibiotic prophylaxis in the ICU: to be or not to be administered for patients undergoing procedures? |
2018 | Network Call on Surveillance | WAWES | Book Chapter Antibiotics and Antimicrobial Resistance Genes (Springer International Publishing)’ eBook ISBN 978-3-030-40422-2, Hardcover ISBN 978-3-030-40421-5, 2020.
Chapter 1 –* ‘Entry routes of antibiotics and antimicrobial resistance in the environment' P17, P19 Chapter 6 –‘Antimicrobial/antibiotic resistance genes due to manure and agricultural waste applications’ P19 |
2018 | Network Call on Surveillance | WAWES | Antimicrobial Agents and Chemotherapy, 2019.
Wildlife Is Overlooked in the Epidemiology of Medically Important Antibiotic-Resistant Bacteria |
2018 | Network Call on Surveillance | CoEval-AMR | Frontiers in Veterinary Science, 2021. Evaluating the Integration of One Health in Surveillance Systems for Antimicrobial Use and Resistance: A Conceptual Framework |
2018 | Network Call on Surveillance | PRAISE | Clinical Microbiology and Infection, 2021. Getting it right: automated surveillance of healthcare-associated infections |
2018 | Network Call on Surveillance | PRAISE | Clinical Microbiology and Infection, 2021. PRAISE: providing a roadmap for automated infection surveillance in Europe |
2018 | Network Call on Surveillance | PRAISE | Clinical Microbiology and Infection, 2021. Governance aspects of large-scale implementation of automated surveillance of healthcare-associated infections |
2018 | Network Call on Surveillance | PRAISE | Clinical Microbiology and Infection, 2021. Information technology aspects of large-scale implementation of automated surveillance of healthcare-associated infections |
2018 | Network Call on Surveillance | CoEval-AMR | Frontiers in Veterinary Science, 2021. Assessment of Evaluation Tools for Integrated Surveillance of Antimicrobial Use and Resistance Based on Selected Case Studies |
2016 | Transmission Dynamics | AWARE | Environment International, 2018.
Selective concentration for ciprofloxacin resistance in Escherichia coli grown in complex aquatic bacterial biofilms |
2016 | Transmission Dynamics | AWARE | Journal of Environmental Protection, 2017.
Physico-Chemical and Microbiological Assessment of Organic Pollution in Plain Salty Lakes from Protected Regions |
2016 | Transmission Dynamics | AWARE | PlosOne, 2020.
Whole genome sequencing snapshot of multi-drug resistant Klebsiella pneumoniae strains from hospitals and receiving wastewater treatment plants in Southern Romania |
2016 | Transmission Dynamics | AWARE | MEDICHUB MEDIA, 2018.
Review on methods for analyzing the antibiotic resistance in wastewater samples |
2016 | Transmission Dynamics | BEAT-AMR | bioRxiv, 2020.
An integrated model system to gain mechanistic insights into biofilm formation and antimicrobial resistance development in Pseudomonas aeruginosa MPAO1 |
2016 | Transmission Dynamics | Collateral Damage | PNAS, 2018.
Cellular hysteresis as a principle to maximize the efficacy of antibiotic therapy |
2016 | Transmission Dynamics | Collateral Damage | Nature Communications, 2018.
Conserved collateral antibiotic susceptibility networks in diverse clinical strains of Escherichia coli |
2016 | Transmission Dynamics | Collateral Damage | Scandinavian Journal of Primary Health Care, 2020.
Retrospective study of men with E. coli UTI treated with an oral antibiotic, and risk for a new prescription or hospital admission due to UTI |
2016 | Transmission Dynamics | Collateral Damage | PloS Biology, 2020.
Molecular mechanisms of collateral sensitivity to the antibiotic nitrofurantoin |
2016 | Transmission Dynamics | Gene-gas | Journal of Visualized Experiments: JoVE, 2018.
Ultrasensitive Detection of Biomarkers by Using a Molecular Imprinting Based Capacitive Biosensor |
2016 | Transmission Dynamics | Gene-gas | Frontiers in Microbiology, 2020.
Biotechnological Potential of Bdellovibrio and Like Organisms and Their Secreted Enzymes |
2016 | Transmission Dynamics | Gene-gas | Sensors and Actuators B: Chemical, 2018.
Bacteriophages as biorecognition elements in capacitive biosensors: Phage and host bacteria detection |
2016 | Transmission Dynamics | JumpAR | Cell, 2018.
Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance |
2016 | Transmission Dynamics | JumpAR | Current Opinion in Structural Biology, 2019.
Jump ahead with a twist: DNA acrobatics drive transposition forward |
2016 | Transmission Dynamics | MODERN | Antimicrobial Resistance & Infection Control, 2018.
Intestinal colonization due to Escherichia coli ST131: risk factors and prevalence |
2016 | Transmission Dynamics | MODERN | The Journal of Hospital Infection, 2019.
Vagino-rectal colonization and maternal–neonatal transmission of Enterobacteriaceae producing extended-spectrum β-lactamases or carbapenemases: a cross-sectional study |
2016 | Transmission Dynamics | MODERN | International Journal of Antimicrobial Agents, 2018.
Incidence and Risk Factors for Acquisition of Extended-Spectrum β-Lactamase-Producing Enterobacteriaceae in Newborns in Seville, Spain: A Prospective Cohort Study |
2016 | Transmission Dynamics | MODERN | Antimicrobial Resistance & Infection Control, 2018.
Intestinal colonization due to Escherichia coli ST131: risk factors and prevalence |
2016 | Transmission Dynamics | PET-Risk | Veterinary Microbiology, 2019.
Clonal relatedness of Proteus mirabilis strains causing urinary tract infections in companion animals and humans |
2016 | Transmission Dynamics | PET-Risk | Journal of Antimicrobial Chemotherapy, 2019.
Klebsiella pneumoniae causing urinary tract infections in companion animals and humans: population structure, antimicrobial resistance and virulence genes |
2016 | Transmission Dynamics | PET-Risk | Microbial Drug Resistance, 2020.
Sharing of Clinically Important Antimicrobial Resistance Genes by Companion Animals and Their Human Household Members |
2016 | Transmission Dynamics | PET-Risk | Journal of Antimicrobial Chemotherapy, 2019.
Emergence of Escherichia coli ST131 H30/H30-Rx subclones in companion animals |
2016 | Transmission Dynamics | PNEUMOSPREAD | Journal of Allergy and Clinical Immunology, 2020.
Regulating T cell differentiation through the polyamine spermidine |
2016 | Transmission Dynamics | PNEUMOSPREAD | Nature Microbiology, 2019.
Pneumolysin binds to the mannose receptor C type 1 (MRC-1) leading to anti-inflammatory responses and enhanced pneumococcal survival |
2016 | Transmission Dynamics | PREPARE | Heredity, 2018.
The fitness landscape of the codon space across environments |
2016 | Transmission Dynamics | PREPARE | Evolution, 2019.
How phenotypic convergence arises in experimental evolution |
2016 | Transmission Dynamics | PREPARE | Evolution, 2019.
Environment changes epistasis to alter trade‐offs along alternative evolutionary paths |
2016 | Transmission Dynamics | PREPARE | Nature Ecology & Evolution, 2020.
Dysbiosis personalizes fitness effect of antibiotic resistance in the mammalian gut |
2016 | Transmission Dynamics | PREPARE | PLOS Biology, 2020.
Low mutational load and high mutation rate variation in gut commensal bacteria |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | International Journal of Chronic Obstructive Pulmonary Disease, 2019.
Personalized medicine for patients with COPD: where are we? |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Frontiers in Immunology, 2019.
Peptidoglycan Recognition Protein 4 Limits Bacterial Clearance and Inflammation in Lungs by Control of the Gut Microbiota |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Nature Communications, 2020.
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. |
2016 | Transmission Dynamics | SpARK | Frontiers in Microbiology, 2019.
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov |
2016 | Transmission Dynamics | SpARK | bioRxiv, 2020.
Genomic Epidemiology with Mixed Samples |
2016 | Transmission Dynamics | SpARK | Wellcome Open Res, 2020.
High-resolution sweep metagenomics using ultrafast read mapping and inference |
2016 | Transmission Dynamics | ST131TS | Eurosurveillance, 2019.
Emergence of diversity in carbapenemase-producing Escherichia coli ST131, England, January 2014 to June 2016 |
2016 | Transmission Dynamics | ST131TS | Infection, Genetics and Evolution, 2020.
The evolutionary puzzle of Escherichia coli ST131 |
2016 | Transmission Dynamics | ST131TS | mBio, 2020.
Simulating multi-level dynamics of antimicrobial resistance in a membrane computing model |
2016 | Transmission Dynamics | STARCS | Environment International, 2018.
Wild corvid birds colonized with vancomycin-resistant Enterococcus faecium of human origin harbor epidemic vanA plasmids |
2016 | Transmission Dynamics | STARCS | Microbiome, 2018.
In-depth resistome analysis by targeted metagenomics |
2016 | Transmission Dynamics | STARCS | Science of The Total Environment, 2018.
Water supply and feed as sources of antimicrobial-resistant Enterococcus spp. in aquacultures of rainbow trout (Oncorhyncus mykiss), Portugal |
2016 | Transmission Dynamics | STARCS | bioRxiv, 2019.
Genomes of a major nosocomial pathogen Enterococcus faecium are shaped by adaptive evolution of the chromosome and plasmidome |
2016 | Transmission Dynamics | STARCS | Microbial Genomics, 2018.
mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species |
2016 | Transmission Dynamics | STARCS | Environmental Microbiology Reports, 2018.
Long‐term carriage and rapid transmission of extended spectrum beta‐lactamase‐producing E. coli within a flock of Mallards in the absence of antibiotic selection |
2016 | Transmission Dynamics | STARCS | Frontiers in Microbiology, 2017.
Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiota in the Absence of Antibiotic Treatment |
2016 | Transmission Dynamics | STARCS | Annals of the New York Academy of Sciences, 2016.
Genomic and metagenomic technologies to explore the antibiotic resistance mobilome |
2016 | Transmission Dynamics | STARCS | Bioinformatics, 2017.
AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks |
2016 | Transmission Dynamics | STARCS | Nature Microbiology, 2018.
Prediction of the intestinal resistome by a three-dimensional structure-based method |
2016 | Transmission Dynamics | STARCS | F1000Research, 2018.
The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies |
2016 | Transmission Dynamics | STARCS | Foodborne Pathogens and Disease, 2018.
Are Food Animals Responsible for Transfer of Antimicrobial-Resistant Escherichia coli or Their Resistance Determinants to Human Populations? A Systematic Review |
2016 | Transmission Dynamics | STARCS | Environmental Microbiology, 2019.
Phylogenomics of Enterococcus faecalis from wild birds: new insights into host‐associated differences in core and accessory genomes of the species |
2016 | Transmission Dynamics | STARCS | Royal Society of Open Science, 2017.
Modelling the impact of curtailing antibiotic usage in food animals on antibiotic resistance in humans |
2016 | Transmission Dynamics | STARCS | Bioinformatics, 2020.
gplas: a comprehensive tool for plasmid analysis using short-read graphs |
2016 | Transmission Dynamics | TransPred | bioRxiv, 2018.
Conjugation factors controlling F-plasmid antibiotic resistance transmission |
2016 | Transmission Dynamics | TransPred | Plos Computational Biology, 2018.
Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data |
2016 | Transmission Dynamics | TransPred | Scientific Reports, 2020.
Complete genome sequences of Streptococcus pyogenes NCTC 8198T and CCUG 4207T, the type strain of the type species of the genus Streptococcus: 100% match in length and sequence identity between PacBio solo and Illumina plus Oxford Nanopore hybrid assemblies |
2016 | Transmission Dynamics | TransPred | Drug Development Research, 2018.
Inhibiting conjugation as a tool in the fight against antibiotic resistance |
2016 | Transmission Dynamics | TransPred | bioRxiv, 2020.
Genomic epidemiology and evolution of Escherichia coli in wild animals |
2016 | Transmission Dynamics | Gene-gas | Front. Microbiol, 2017.
Revisiting Antibiotic Resistance Spreading in Wastewater Treatment Plants – Bacteriophages as a Much Neglected Potential Transmission Vehicle |
2016 | Transmission Dynamics | Gene-gas | Journal of Bacteriology, 2020.
Studies on Bd0934 and Bd3507, Two Secreted Nucleases from Bdellovibrio bacteriovorus, Reveal Sequential Release of Nucleases during the Predatory Cycle |
2016 | Transmission Dynamics | ST131TS | Clinical Microbiol and Infection, 2020.
Molecular epidemiology of Escherichia coli causing bloodstream infections in a centralized Canadian region: a population-based surveillance study |
2016 | Transmission Dynamics | ST131TS | Antimicrob Agents Chemother, 2020.
Emerging Antimicrobial Resistant High-Risk clones among Klebsiella pneumoniae: ST307 and ST147 |
2016 | Transmission Dynamics | ST131TS | Front Microbiol, 2020.
Pathogenic Escherichia coli in Dogs Reveals the Predominance of ST372 and the Human-Associated ST73 Extra-Intestinal Lineages |
2016 | Transmission Dynamics | ST131TS | J Antimicrob Chemother, 2019.
Emergence of the C1-M27 cluster in ST131 Escherichia coli from companion animals in France |
2016 | Transmission Dynamics | ST131TS | Appl Environ Microbiol, 2020.
A Comprehensive Account of Escherichia coli Sequence Type 131 in Wastewater Reveals an Abundance of Fluoroquinolone-Resistant Clade A Strains |
2016 | Transmission Dynamics | STARCS | Front. Microbiol, 2020.
Antibiotic Resistance: Moving From Individual Health Norms to Social Norms in One Health and Global Health |
2016 | Transmission Dynamics | BEAT-AMR | Journal of Hospital Infection, 2020.
Selection of resistance by antimicrobial coatings in the healthcare setting |
2016 | Transmission Dynamics | PNEUMOSPREAD | J Mol Med, 2021. Clarithromycin impairs tissue-resident memory and Th17 responses to macrolide-resistant Streptococcus pneumoniae infections. |
2016 | Transmission Dynamics | STARCS | Genome Medicine, 2021. The global dissemination of hospital clones of Enterococcus faecium |
2016 | Transmission Dynamics | MODERN | Nature Microbiology, 2021. Pervasive transmission of a carbapenem resistance plasmid in the gut microbiota of hospitalized patients. |
2016 | Transmission Dynamics | HECTOR | Frontiers in Microbiology, 2021. Genomic Diversity and Virulence Potential of ESBL- and AmpC-β-Lactamase-Producing Escherichia coli Strains From Healthy Food Animals Across Europe. |
2016 | Transmission Dynamics | TransPred | bioRxiv, 2021. Machine learning prediction of resistance to sub-inhibitory antimicrobial concentrations from Escherichia coli genomes |
2016 | Transmission Dynamics | PREPARE | Molecular Biology and Evolution, 2021. DNA breaks-mediated fitness cost reveals RNase HI as a new target for selectively eliminating antibiotic resistant bacteria. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Scientific Reports, 2021. Novel computational analysis of large transcriptome datasets identifies sets of genes distinguishing chronic obstructive pulmonary disease from healthy lung samples. |
2016 | Transmission Dynamics | JumpAR | Molecular Systems Biology, 2021. Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Advanced Drug Delivery Reviews, 2021. The clinical role of host and bacterial-derived extracellular vesicles in pneumonia |
2016 | Transmission Dynamics | Gene-gas | Journal of Oral Microbiology, 2021. Entamoeba gingivalis: epidemiology, genetic diversity and association with oral microbiota signatures in North Eastern Tanzania |
2016 | Transmission Dynamics | STARCS | bioRxiv, 2021. A high-throughput multiplexing and selection strategy to complete bacterial genomes |
2016 | Transmission Dynamics | ST131TS | medRxiv, 2021. Bacterial genotypic and patient risk factors for adverse outcomes in Escherichia coli bloodstream infections: a prospective molecular-epidemiological study |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Mediators of Inflammation, 2021. Hypoxia-Inducible Factor-1α in Macrophages, but Not in Neutrophils, Is Important for Host Defense during Klebsiella pneumoniae-Induced Pneumosepsis |
2016 | Transmission Dynamics | HECTOR | bioRxiv, 2021. Benchmarking topological accuracy of bacterial phylogenomic workflows using in silico evolution |
2016 | Transmission Dynamics | TransComp-ESC-R | Microorganisms, 2021. Successful Dissemination of Plasmid-Mediated Extended-Spectrum β-Lactamases in Enterobacterales over Humans to Wild Fauna |
2016 | Transmission Dynamics | STARCS and ST131TS | Clinical Microbiology Reviews, 2021. Evolutionary Pathways and Trajectories in Antibiotic Resistance |
2016 | Transmission Dynamics | TransPred | mSystems, 2021. Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli Genomes |
2016 | Transmission Dynamics | TransComp-ESC-R | mBio, 2021. Host Colonization as a Major Evolutionary Force Favoring the Diversity and the Emergence of the Worldwide Multidrug-Resistant Escherichia coli ST131 |
2016 | Transmission Dynamics | BEAT-AMR
| Front Microbiol, 2021. Prevalent Synergy and Antagonism Among Antibiotics and Biocides in Pseudomonas aeruginosa. |
2016 | Transmission Dynamics | BEAT-AMR
| Curr Opin Biotechnol, 2020. Environmental drivers of metabolic heterogeneity in clonal microbial populations. |
2016 | Transmission Dynamics | BEAT-AMR
| J Colloid Interface Sci, 2019. Substrate viscosity plays an important role in bacterial adhesion under fluid flow. |
2016 | Transmission Dynamics | Collateral Damage | Cell. Mol. Life Sci. 77, 2020. Multi-scale modeling of drug binding kinetics to predict drug efficacy. |
2016 | Transmission Dynamics | Collateral Damage | PLoS Comput Biol, 2020. Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones. |
2016 | Transmission Dynamics | Collateral Damage | Nat Commun, 2019. Collateral sensitivity constrains resistance evolution of the CTX-M-15 β-lactamase. |
2016 | Transmission Dynamics | Collateral Damage | FEMS Microbiology Reviews, 2020. Antibiotic resistance: turning evolutionary principles into clinical reality |
2016 | Transmission Dynamics | Collateral Damage | EClinicalMedicine, 2019. Three versus five days of pivmecillinam for community-acquired uncomplicated lower urinary tract infection: A randomised, double-blind, placebo-controlled superiority trial. |
2016 | Transmission Dynamics | Collateral Damage | Infect Drug Resist, 2019. Pivmecillinam compared to other antimicrobials for community-acquired urinary tract infections with Escherichia coli, ESBL-producing or not – a retrospective cohort study. |
2016 | Transmission Dynamics | Collateral Damage | Antimicrobial Chemotherapy, 2019. Treatment duration of pivmecillinam in men, non-pregnant and pregnant women for community-acquired urinary tract infections caused by Escherichia coli: a retrospective Danish cohort study, Journal of Antimicrobial Chemotherapy |
2016 | Transmission Dynamics | Collateral Damage | Antibiotics, 2019. "Pivmecillinam for Uncomplicated Lower Urinary Tract Infections Caused by Staphylococcus saprophyticus—Cumulative Observational Data from Four Recent Clinical Studies" |
2016 | Transmission Dynamics | Collateral Damage | mSphere. 2019. OXA-48-Mediated Ceftazidime-Avibactam Resistance Is Associated with Evolutionary Trade-Offs. |
2016 | Transmission Dynamics | Collateral Damage | PLoS Pathog, 2021. Mechanisms and therapeutic potential of collateral sensitivity to antibiotics. |
2016 | Transmission Dynamics | Collateral Damage | Antimicrob Agents Chemother, 2020. Ciprofloxacin Pharmacokinetics/Pharmacodynamics against Susceptible and Low-Level Resistant Escherichia coli Isolates in an Experimental Ascending Urinary Tract Infection Model in Mice. |
2016 | Transmission Dynamics | Collateral Damage | J Glob Antimicrob Resist, 2020. Manganese complex [Mn(CO)3(tpa-κ3N)]Br increases antibiotic sensitivity in multidrug resistant Streptococcus pneumoniae. |
2016 | Transmission Dynamics | DARWIN | Sci Total Environ, 2020. Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review. |
2016 | Transmission Dynamics | DARWIN | Environ. Sci. Technol. Lett, 2018. Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community |
2016 | Transmission Dynamics | DARWIN | FEMS Microbiol Ecol, 2018. Water and sanitation: an essential battlefront in the war on antimicrobial resistance. |
2016 | Transmission Dynamics | DARWIN | Plasmid, 2018. Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives. |
2016 | Transmission Dynamics | DARWIN | Environ. Sci. Technol. 2021. Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage |
2016 | Transmission Dynamics | DARWIN | Water Res, 2019. Spatial ecology of a wastewater network defines the antibiotic resistance genes in downstream receiving waters. |
2016 | Transmission Dynamics | EMerGE-NeT | PLoS Comput Biol, 2021. Effects of incomplete inter-hospital network data on the assessment of transmission dynamics of hospital-acquired infections. |
2016 | Transmission Dynamics | EMerGE-NeT | PLoS Comput Biol, 2021. Relevance of intra-hospital patient movements for the spread of healthcare-associated infections within hospitals - a mathematical modeling study. |
2016 | Transmission Dynamics | EMerGE-NeT | PLoS Comput Biol, 2021. Modelling pathogen spread in a healthcare network: Indirect patient movements. |
2016 | Transmission Dynamics | EMerGE-NeT | Epidemics, 2020. Impact of inter-hospital transfers on the prevalence of resistant pathogens in a hospital–community system. |
2016 | Transmission Dynamics | EMerGE-NeT | MATHEMATICA APPLICANDA, 2019. Analysis of the AOK Plus data and derived hospital network. |
2016 | Transmission Dynamics | EMerGE-NeT | J Infect. 2021. Interventions to reduce infections caused by multidrug resistant Enterobacteriaceae (MDR-E): A systematic review and meta-analysis. |
2016 | Transmission Dynamics | JumpAR | Nucleic Acids Res, 2021. SMART: recent updates, new developments and status in 2020. |
2016 | Transmission Dynamics | MODERN | Clinical Microbiology and Infection, 2021. Household acquisition and transmission of extended-spectrum β-lactamase (ESBL) -producing Enterobacteriaceae after hospital discharge of ESBL-positive index patients |
2016 | Transmission Dynamics | MODERN | Clinical Microbiology and Infection, 2021. Populations of extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae are different in human-polluted environment and food items: a multicentre European study |
2016 | Transmission Dynamics | PNEUMOSPREAD | EMBO Mol Med. 2020. Mannose receptor-derived peptides neutralize pore-forming toxins and reduce inflammation and development of pneumococcal disease. |
2016 | Transmission Dynamics | PNEUMOSPREAD | Cell Microbiol. 2019. Emerging concepts in the pathogenesis of the Streptococcus pneumoniae: From nasopharyngeal colonizer to intracellular pathogen. |
2016 | Transmission Dynamics | PNEUMOSPREAD | Microorganisms. 2020. Lysogeny in Streptococcus pneumoniae. |
2016 | Transmission Dynamics | PNEUMOSPREAD | Microorganisms. 2020. Lysogeny in Streptococcus pneumoniae. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | FASEB J. 2020. Influenza virus-mediated suppression of bronchial Chitinase-3-like 1 secretion promotes secondary pneumococcal infection. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | PLoS Comput Biol. 2020. Detection and segmentation of morphologically complex eukaryotic cells in fluorescence microscopy images via feature pyramid fusion. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | J Cyst Fibros. 2021. Defective BACH1/HO-1 regulatory circuits in cystic fibrosis bronchial epithelial cells. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Proc Natl Acad Sci U S A. 2020. Noncoding RNA MaIL1 is an integral component of the TLR4-TRIF pathway. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | mBio. 2020. A MicroRNA Network Controls Legionella pneumophila Replication in Human Macrophages via LGALS8 and MX1. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Sci Rep. 2020. Transcriptional analysis identifies potential biomarkers and molecular regulators in pneumonia and COPD exacerbation |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Cell Signal. 2020. NF-κB-mediated inhibition of microRNA-149-5p regulates Chitinase-3-like 1 expression in human airway epithelial cells. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Nat Commun. 2019. IL-17+ CD8+ T cell suppression by dimethyl fumarate associates with clinical response in multiple sclerosis. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Virulence. 2019. Antibacterial activity of a Tribolium castaneum defensin in an in vitro infection model of Streptococcus pneumoniae. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | J Infect Dis. 2020. Surface Proteome of Plasma Extracellular Vesicles as Biomarkers for Pneumonia and Acute Exacerbation of Chronic Obstructive Pulmonary Disease. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | J Virol. 2019. TMPRSS2 Is the Major Activating Protease of Influenza A Virus in Primary Human Airway Cells and Influenza B Virus in Human Type II Pneumocytes. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | J Clin Invest. 2019. Intestinal development and homeostasis require activation and apoptosis of diet-reactive T cells. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Nat Microbiol. 2019. Intracellular bacteria engage a STING-TBK1-MVB12b pathway to enable paracrine cGAS-STING signalling. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Methods Mol Biol. 2019. ncRNAs in Inflammatory and Infectious Diseases. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Mol Biol Evol. 2021. Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Sci Rep. 2020. Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity. |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Annals of Intensive Care, 2021. Association between delay in intensive care unit admission and the host response in patients with community-acquired pneumonia |
2016 | Transmission Dynamics | SpARK | G3 (Bethesda). 2021. Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae. |
2016 | Transmission Dynamics | ST131TS | Front Microbiol. 2019. Association Between Kinetics of Early Biofilm Formation and Clonal Lineage in Escherichia coli. |
2016 | Transmission Dynamics | ST131TS | Infect Immun. 2020. Success of Escherichia coli O25b:H4 Sequence Type 131 Clade C Associated with a Decrease in Virulence. |
2016 | Transmission Dynamics | ST131TS | J Antimicrob Chemother. 2021. Spatial distribution of Escherichia coli ST131 C subclades in a centralized Canadian urban region. |
2016 | Transmission Dynamics | ST131TS | Emerg Infect Dis. 2020. Trends in Population Dynamics of Escherichia coli Sequence Type 131, Calgary, Alberta, Canada, 2006-2016. |
2016 | Transmission Dynamics | ST131TS | Infect Genet Evol. 2020. The evolutionary puzzle of Escherichia coli ST131. |
2016 | Transmission Dynamics | ST131TS | Appl Environ Microbiol. 2020. A Comprehensive Account of Escherichia coli Sequence Type 131 in Wastewater Reveals an Abundance of Fluoroquinolone-Resistant Clade A Strains. |
2016 | Transmission Dynamics | ST131TS | Clin Microbiol Rev. 2019. Global Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages. |
2016 | Transmission Dynamics | ST131TS | Diagn Microbiol Infect Dis. 2018. The population structure of clinical extra-intestinal Escherichia coli in a teaching hospital from Nigeria. |
2016 | Transmission Dynamics | ST131TS | Antimicrob Agents Chemother. 2021. Antioxidant Molecules as a Source of Mitigation of Antibiotic Resistance Gene Dissemination. |
2016 | Transmission Dynamics | ST131TS | Antimicrob Resist Infect Control, 2018. Intestinal colonization due to Escherichia coli ST131: risk factors and prevalence. |
2016 | Transmission Dynamics | ST131TS | J Antimicrob Chemother. 2021. Effect of RecA inactivation on quinolone susceptibility and the evolution of resistance in clinical isolates of Escherichia coli. |
2016 | Transmission Dynamics | ST131TS | Antimicrob Agents Chemother. 2021. Antioxidant Molecules as a Source of Mitigation of Antibiotic Resistance Gene Dissemination. |
2016 | Transmission Dynamics | ST131TS | Antimicrob Agents Chemother.2020. Simulating the Influence of Conjugative-Plasmid Kinetic Values on the Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model. |
2016 | Transmission Dynamics | ST131TS | Nat Microbiol. 2019. Prediction of the intestinal resistome by a three-dimensional structure-based method. |
2016 | Transmission Dynamics | ST131TS | J Antimicrob Chemother. 2021. Detection in livestock of the human pandemic Escherichia coli ST131 fimH30(R) clone carrying blaCTX-M-27. |
2016 | Transmission Dynamics | ST131TS | Front Microbiol. 2021. The Origin of Niches and Species in the Bacterial World. |
2016 | Transmission Dynamics | ST131TS | Nat Microbiol. 2019. Defining and combating antibiotic resistance from One Health and Global Health perspectives. |
2016 | Transmission Dynamics | ST131TS | Front Microbiol. 2019. Gene Transmission in the One Health Microbiosphere and the Channels of Antimicrobial Resistance. |
2016 | Transmission Dynamics | ST131TS | Methods Mol Biol. 2020. Statistical Analysis of Accessory Genome. |
2016 | Transmission Dynamics | ST131TS | Methods Mol Biol. 2020. Statistical Analysis of Accessory Genome. |
2016 | Transmission Dynamics | STARCS | mBio. 2020. Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium. |
2016 | Transmission Dynamics | STARCS | Microb Genom. 2020. Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium. |
2016 | Transmission Dynamics | STARCS | Nat Commun. 2021. Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era. |
2016 | Transmission Dynamics | STARCS | J Antimicrob Chemother. 2021. Comparative genomics of ESBL-producing Escherichia coli (ESBL-Ec) reveals a similar distribution of the 10 most prevalent ESBL-Ec clones and ESBL genes among human community faecal and extra-intestinal infection isolates in the Netherlands (2014-17). |
2016 | Transmission Dynamics | STARCS | Front Microbiol. 2021. The Origin of Niches and Species in the Bacterial World. |
2016 | Transmission Dynamics | STARCS | Front Microbiol. 2019. Gene Transmission in the One Health Microbiosphere and the Channels of Antimicrobial Resistance. |
2016 | Transmission Dynamics | STARCS | Nat Microbiol. 2019. Defining and combating antibiotic resistance from One Health and Global Health perspectives. |
2016 | Transmission Dynamics | STARCS | Methods Mol Biol. 2020. Statistical Analysis of Accessory Genome. |
2016 | Transmission Dynamics | STARCS | Antimicrob Agents Chemother. 2021. Selection of Resistant Bacteria in Mallards Exposed to Subinhibitory Concentrations of Ciprofloxacin in Their Water Environment. |
2016 | Transmission Dynamics | STARCS | Microbiol Resour Announc. 2021. Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community. |
2016 | Transmission Dynamics | STARCS | Elife. 2021. MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut. |
2016 | Transmission Dynamics | STARCS | Nat Commun. 2020. Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum. |
2016 | Transmission Dynamics | STARCS | Front Genet. 2019. A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries. |
2016 | Transmission Dynamics | STARCS | J Glob Health. 2019. A cross-sectional survey of practices and knowledge among antibiotic retailers in Nairobi, Kenya. |
2016 | Transmission Dynamics | STARCS | Int J Antimicrob Agents. 2019. Epidemiology of antimicrobial-resistant Escherichia coli carriage in sympatric humans and livestock in a rapidly urbanizing city. |
2016 | Transmission Dynamics | STARCS | Clin Microbiol Infect. 2020. Quantifying the transmission of antimicrobial resistance at the human and livestock interface with genomics. |
2016 | Transmission Dynamics | STARCS | J Microbiol Methods. 2019. Potential in vivo transfer of a blaCTX-M14-harbouring plasmid established by combining long- and short-read sequencing. |
2016 | Transmission Dynamics | TransComp-ESC-R | Diversity of CTX-M-positive Escherichia coli recovered from animals in Canada. Vet Microbiol. 2019 |
2016 | Transmission Dynamics | TransComp-ESC-R | Microbiology Research. 2021. Multidrug Resistance Dissemination in Escherichia coli Isolated from Wild Animals: Bacterial Clones and Plasmid Complicity. |
2016 | Transmission Dynamics | TransComp-ESC-R | One Health. 2021. Drivers of ESBL-producing Escherichia coli dynamics in calf fattening farms: A modelling study. |
2016 | Transmission Dynamics | TransPred | FEMS Microbiol Lett. 2020. Teaching about antibiotic resistance to a broad audience: a multidisciplinary approach. |
2016 | Transmission Dynamics | TransPred | mSphere. 2021. Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico. |
2016 | Transmission Dynamics | TransPred | Anal Chem. 2019. Chemical Changes On, and Through, The Bacterial Envelope in Escherichia coli Mutants Exhibiting Impaired Plasmid Transfer Identified Using Time-of-Flight Secondary Ion Mass Spectrometry. |
2016 | Transmission Dynamics | PREPARE | Evol Ecol, 2020. The effect of environmental heterogeneity on the fitness of antibiotic resistance mutations in Escherichia coli. |
2016 | Transmission Dynamics | PREPARE | Can J Microbiol. 2018. Plasmid persistence: costs, benefits, and the plasmid paradox. |
2016 | Transmission Dynamics | PREPARE | Genome Biol Evol. 2018. Fitness Tradeoffs of Antibiotic Resistance in Extraintestinal Pathogenic Escherichia coli. |
2016 | Transmission Dynamics | PREPARE | Mol Biol Evol. 2021. The Adaptive Potential of the Middle Domain of Yeast Hsp90. |
2016 | Transmission Dynamics | PREPARE | Elife. 2020. Comprehensive fitness maps of Hsp90 show widespread environmental dependence. |
2016 | Transmission Dynamics | PREPARE | EPL, 2018 Playing evolution in the laboratory: From the first major evolutionary transition to global warming. |
2016 | Transmission Dynamics | PREPARE | Peer Community in Evolutionary Biology, 2018. Let’s move beyond costs of resistance! |
2016 | Transmission Dynamics | PREPARE | Heredity (Edinb). 2018. The fitness landscape of the codon space across environments. |
2016 | Transmission Dynamics | PREPARE | Evolutionary Applications. 2020. Identifying the drivers of computationally detected correlated evolution among sites under antibiotic selection |
2016 | Transmission Dynamics | PREPARE | Nat Ecol Evol. 2020. Dysbiosis individualizes the fitness effect of antibiotic resistance in the mammalian gut. |
2016 | Transmission Dynamics | PREPARE | Antimicrob Agents Chemother. 2020. Radial Expansion Facilitates the Maintenance of Double Antibiotic Resistances. |
2016 | Transmission Dynamics | PREPARE | Trends Microbiol. 2018. Evolutionary Mechanisms Shaping the Maintenance of Antibiotic Resistance. |
2016 | Transmission Dynamics | AWARE | Front Microbiol. 2021. Multidrug Resistant Klebsiella pneumoniae ST101 Clone Survival Chain From Inpatients to Hospital Effluent After Chlorine Treatment. |
2016 | Transmission Dynamics | AWARE | Syst Rev. 2019. Do wastewater treatment plants increase antibiotic resistant bacteria or genes in the environment? Protocol for a systematic review. |
2016 | Transmission Dynamics | AWARE | Antibiotics (Basel). 2021. Antibiotic Resistance in Wastewater Treatment Plants and Transmission Risks for Employees and Residents: The Concept of the AWARE Study. |
2016 | Transmission Dynamics | AWARE | Microb Genom. 2020. Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes. |
2016 | Transmission Dynamics | MACOTRA | Epidemics, 2021. Understanding MRSA clonal competition within a UK hospital; the possible importance of density dependence. |
2016 | Transmission Dynamics | SpARK | Wellcome Open Res, 2021. High-resolution sweep metagenomics using ultrafast read mapping and inference |
2016 | Transmission Dynamics | PET-Risk | J Antimicrob Chemother, 2021. Two high-risk clones of carbapenemase-producing Klebsiella pneumoniae that cause infections in pets and are present in the environment of a veterinary referral hospital. |
2016 | Transmission Dynamics | PET-Risk | Antimicrob Agents Chemother, 2020. OXA-181-Producing Extraintestinal Pathogenic Escherichia coli Sequence Type 410 Isolated from a Dog in Portugal. |
2016 | Transmission Dynamics | PET-Risk | Journal of Clinical Microbiology, 2019. Evidence of Sharing of Klebsiella pneumoniae Strains between Healthy Companion Animals and Cohabiting Humans. |
2016 | Transmission Dynamics | PET-Risk | Journal of Clinical Microbiology, 2021. Driving Laboratory Standardization of Bacterial Culture and Antimicrobial Susceptibility Testing in Veterinary Clinical Microbiology in Europe and Beyond |
2016 | Transmission Dynamics | ST131TS | European Journal of Clinical Microbiology & Infectious Diseases, 2021. Population-based epidemiology of Escherichia coli ST1193 causing blood stream infections in a centralized Canadian region |
2016 | Transmission Dynamics | ST131TS | Philosophical Transactions of the Royal Society B Biological Sciences, 2021. Translational demand is not a major source of plasmid-associated fitness costs. |
2016 | Transmission Dynamics | MODERN | European Journal of Clinical Microbiology & Infectious Diseases, 2021. Higher prevalence of CTX-M-27-producing Escherichia coli belonging to ST131 clade C1 among residents of two long-term care facilities in Southern Spain. |
2016 | Transmission Dynamics | MODERN | European Journal of Clinical Microbiology & Infectious Diseases, 2021. Interplay between IncF plasmids and topoisomerase mutations conferring quinolone resistance in the Escherichia coli ST131 clone: stability and resistance evolution |
2016 | Transmission Dynamics | Restrict-Pneumo-AMR | Clinical & Experimental Immunology, 2022. The PPAR-γ agonist pioglitazone exerts proinflammatory effects in bronchial epithelial cells during acute Pseudomonas aeruginosa pneumonia. |
2016 | Transmission Dynamics | STARCS | GigaScience, 2021. A high-throughput multiplexing and selection strategy to complete bacterial genomes |
2016 | Transmission Dynamics | BEAT-AMR | The ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021. Role of the flagellar hook in the structural development and antibiotic tolerance of Pseudomonas aeruginosa biofilms |
2016 | Transmission Dynamics | STARCS | The Lancet Microbe, 2022. The interplay between community and hospital Enterococcus faecium clones within health-care settings: a genomic analysis |
2016 | Transmission Dynamics | MACOTRA | International Journal of Antimicrobial Agents, 2022. MRSA Surveillance Programmes Worldwide: Moving towards a harmonised international approach |
2016 | Transmission Dynamics | HECTOR | bioRxiv, 2022. Genome-wide association reveals host-specific genomic traits in Escherichia coli |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | Microbiology Spectrum, 2021. Ubericin K, a New Pore-Forming Bacteriocin Targeting mannose-PTS. |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | Biophysical Journal, 2021. Switching off: the phenotypic transition to the uninduced state of the lactose uptake pathway |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | DISRUPT | Nature Protocols, 2022. CRISPRi-seq for genome-wide fitness quantification in bacteria. |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | EMBARK | Nature, 2021. Unravelling the collateral damage of antibiotics on gut bacteria. |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | MTI4MDR-TB | Organic & Biomolecular Chemistry, 2021. K2S2O8-mediated coupling of 6-amino-7-aminomethyl-thiazolino-pyridones with aldehydes to construct amyloid affecting pyrimidine-fused thiazolino-2-pyridones. |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | MTI4MDR-TB | The Journal of Organic Chemistry, 2021. Tandem Ring Opening/Intramolecular [2 + 2] Cycloaddition Reaction for the Synthesis of Cyclobutane Fused Thiazolino-2-Pyridones. |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | RIBOTARGET | PNAS, 2022. A hyperpromiscuous antitoxin protein domain for the neutralization of diverse toxin domains |
2018 | Innovations against antibiotic-resistant bacteria: New targets, compounds and tools | Anti-Persistence | Research Square, 2022. The structure of SpoT reveals evolutionary tuning of enzymatic output through constraint of the conformational landscape |
2018 | JPIAMR-VRI Network Call | NEAR-AMR | The Lancet Microbe, 2021. NIMble innovation - a networked model for public antibiotic trials. |
2018 | Network Call on Surveillance | WAWES | Current Opinion in Microbiology, 2021. The potential of using E. coli as an indicator for the surveillance of antimicrobial resistance (AMR) in the environment. |
2018 | Network Call on Surveillance | PRAISE | Journal of Hospital Infection, 2022. Automated surveillance systems for healthcare-associated infections: results from a European survey and experiences from real-life utilization. |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | J Bacteriol. 2016. Antibodies Damage the Resilience of Fimbriae, Causing Them To Be Stiff and Tangled. |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Curr Opin Syst Biol, 2017. Chemical genetics in drug discovery. |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Nature. 2018. Species-specific activity of antibacterial drug combinations. |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Front Microbiol. 2018. Enhanced Biofilm Formation and Membrane Vesicle Release by Escherichia coli Expressing a Commonly Occurring Plasmid Gene, kil. |
2015 | Antimicrobial Resistance through the JPIAMR | Combinatorials | Diagnostics (Basel). 2020. Guideline for Urine Culture and Biochemical Identification of Bacterial Urinary Pathogens in Low-Resource Settings. |
2017 | Comparison of prevention, control and intervention strategies for AMR infections through multidisciplinary studies,
including One Health approaches | INART | Journal of Environmental Management, 2022. Fate of Clostridia and other spore-forming Firmicute bacteria during feedstock anaerobic digestion and aerobic composting |