Joint Programming Initiative on Antimicrobial Resistance

Publications from JPIAMR Supported Projects

To date, JPIAMR has funded 50 AMR research projects, including both transnational research projects and research networks, and invested over 50 million Euros. The efforts of JPIAMR to combat AMR by supporting excellent scientific research and researchers are now being realised by the publication of JPIAMR funded research.

The publications from the projects supported under the JPIAMR framework involve insights to the diverse aspects of AMR including transmission, therapeutics, environmental reservoirs of microbes and resistance genes as well as technological platforms and policy papers. Many other projects and networks also resulted in excellent publications.

The publications where JPIAMR has been acknowledged to support the researchers via grants are listed below.

In case we have missed any publication, please contact us at with the details.

Call YearCall NamePublication
2014InnovaResistanceVirology Journal. 2015
Glycoside hydrolase family 32 is present in Bacillus subtilis phages
2014InnovaResistanceDrug Discovery Today: Technologies. 2018
Automated assays for thermodynamic (equilibrium) solubility determination
2014InnovaResistanceJournal of Enzyme Inhibition and Medicinal Chemistry. 2017
Beta-lactamase database (BLDB) – structure and function
2014InnovaResistanceInternational Journal of Antimicrobial Agents. 2017
Performance of the Xpert® Carba-R v2 in the daily workflow of a hygiene unit in a country with a low prevalence of carbapenemase-producing Enterobacteriaceae
2014InnovaResistanceProteins: Structure, Function, and Bioinformatics. 2016
Prior knowledge or freedom of interpretation? A critical look at a recently published classification of “novel” Zn binding sites
2014InnovaResistanceJournal of Computer-Aided Molecular Design. 2018
Blinded evaluation of farnesoid X receptor (FXR) ligands binding using molecular docking and free energy calculations
2014InnovaResistanceJournal of Computer-Aided Molecular Design. 2018
SAMPL6: calculation of macroscopic pKa values from ab initio quantum mechanical free energies
2014InnovaResistanceJournal of Computer-Aided Molecular Design. 2016
Prediction of cyclohexane-water distribution coefficients for the SAMPL5 data set using molecular dynamics simulations with the OPLS-AA force field
2014InnovaResistanceCurrent Opinion in Microbiology. 2017
The divisome at 25: the road ahead
2014InnovaResistancebioRxiv. 2018
Structural analysis of the interaction between the bacterial cell division proteins FtsQ and FtsB
2014InnovaResistancePLOS ONE. 2017
Effective Control of Molds Using a Combination of Nanoparticles
2014InnovaResistanceJournal of Nanobiotechnology. 2017
Metal nanoparticles: understanding the mechanisms behind antibacterial activity
2014InnovaResistanceJournal of Materials Chemistry B. 2016
A one-step sonochemical synthesis of stable ZnO–PVA nanocolloid as a potential biocidal agent
2014InnovaResistanceNucleic Acids Research. 2015
Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)>
2014InnovaResistanceNature Communications. 2015
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
2015Antimicrobial Resistance through the JPIAMRClinical Microbiology and Infection. 2018
Automated time-lapse microscopy a novel method for screening of antibiotic combination effects against multidrug-resistant Gram-negative bacteria>
2015Antimicrobial Resistance through the JPIAMRClinical Microbiology and Infection. 2018
Semi-mechanistic pharmacokinetic–pharmacodynamic modelling of antibiotic drug combinations
2015Antimicrobial Resistance through the JPIAMRClinical Microbiology and Infection. 2018
PK/PD characterization of combined antimicrobial agents: a real challenge and an urgent need
2015Antimicrobial Resistance through the JPIAMRMolecular Microbiology. 2017
Silver potentiates aminoglycoside toxicity by enhancing their uptake
2015Antimicrobial Resistance through the JPIAMRNature. 2018
Species-specific activity of antibacterial drug combinations
2015Antimicrobial Resistance through the JPIAMRbioRxiv. 2018
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39
2015Antimicrobial Resistance through the JPIAMRbioRxiv. 2018
RocS drives chromosome segregation and nucleoid occlusion in Streptococcus pneumoniae
2015Antimicrobial Resistance through the JPIAMRbioRxiv. 2018
High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions
2015Antimicrobial Resistance through the JPIAMRbioRxiv. 2018
Antibiotic-induced cell chaining triggers pneumococcal competence by reshaping quorum sensing to autocrine signaling
2016Transmission DynamicsJournal of Visualized Experiments : JoVE. 2018
Ultrasensitive Detection of Biomarkers by Using a Molecular Imprinting Based Capacitive Biosensor
2016Transmission DynamicsEnvironment International. 2018
Wild corvid birds colonized with vancomycin-resistant Enterococcus faecium of human origin harbor epidemic vanA plasmids
2016Transmission DynamicsMicrobiome. 2018
In-depth resistome analysis by targeted metagenomics
2016Transmission DynamicsScience of The Total Environment. 2018
Water supply and feed as sources of antimicrobial-resistant Enterococcus spp. in aquacultures of rainbow trout (Oncorhyncus mykiss), Portugal
2016Transmission DynamicsCell. 2018
Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance
2016Transmission DynamicsMarine Genomics. 2018
Complete genome sequence of the marine Rhodococcus sp. H-CA8f isolated from Comau fjord in Northern Patagonia, Chile
2016Transmission DynamicsbioRxiv. 2018
Conjugation factors controlling F-plasmid antibiotic resistance transmissio
2016Transmission DynamicsEnvironment International. 2018
Selective concentration for ciprofloxacin resistance in Escherichia coli grown in complex aquatic bacterial biofilms
2016Transmission DynamicsbioRxiv. 2018
High-resolution sweep metagenomics using ultrafast read mapping and inference
2016Transmission DynamicsbioRxiv. 2018
The fitness landscape of the codon space across environments
2016AMR Networks/Working GroupsTravel Medicine and Infectious Disease. 2018
The role of ‘filth flies’ in the spread of antimicrobial resistance
2016AMR Networks/Working GroupsViruses. 2018
Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains
2016AMR Networks/Working GroupsClinical Microbiology and Infection. 2018
Prioritizing research areas for antibiotic stewardship programmes in hospitals: a behavioural perspective consensus paper
2016AMR Networks/Working GroupsNature Reviews Microbiology (2018)
Developmental roadmap for antimicrobial susceptibility testing systems
2016AMR Networks/Working GroupsEuropean Journal of Clinical Microbiology & Infectious Diseases, 1-8, 2019
The successful uptake and sustainability of rapid infectious disease and antimicrobial resistance point-of-care testing requires a complex ‘mix-and-match’ implementation package
2016Transmission DynamicsDrug Development Research, 80(1), 19-23, 2019
Inhibiting conjugation as a tool in the fight against antibiotic resistance
2015Antimicrobial Resistance through the JPIAMRInternational Journal of Antimicrobial Agents, 53(Curr Pharm Des 21 2015), 34-39, 2019
An alternative strategy for combination therapy: Interactions between polymyxin B and non-antibiotics
2014InnovaResistanceJournal of Computer-Aided Molecular Design, 1-11, 2019
Blinded evaluation of cathepsin S inhibitors from the D3RGC3 dataset using molecular docking and free energy calculations
2016Transmission DynamicsVeterinary Microbiology, 228 (Antimicrob. Agents Chemother. 49 2005), 77-82, 2019
Clonal relatedness of Proteus mirabilis strains causing urinary tract infections in companion animals and humans
2014InnovaResistanceAnnals of the New York Academy of Sciences, 1435(1), 5-17, 2019
Genomics of antibiotic‐resistance prediction in Pseudomonas aeruginosa
2014InnovaResistanceJournal of Pharmaceutical Sciences, 108(1), 630-640, 2019
Model-based drug development in pulmonary delivery: Pharmacokinetic analysis of novel drug candidates for treatment of Pseudomonas aeruginosa lung infection
2016AMR Networks/Working GroupsEvidence-based Complementary and Alternative Medicine, 2019, 5365608, 2019
The Contribution of Complementary and Alternative Medicine to Reduce Antibiotic Use: A Narrative Review of Health Concepts, Prevention, and Treatment Strategies
2015Antimicrobial Resistance through the JPIAMREuropean Journal of Pharmaceutical Sciences, 131(Antimicrob. Agents Chemother. 61 2017), 218-229, 2019
High voriconazole target-site exposure after approved sequence dosing due to nonlinear pharmacokinetics assessed by long-term microdialysis
2015Antimicrobial Resistance through the JPIAMRbioRxiv, 2019
Three new integration vectors and fluorescent proteins for use in the opportunistic human pathogen Streptococcus pneumoniae
2016Transmission DynamicsbioRxiv, 2019
How phenotypic convergence arises in experimental evolution
2016Transmission DynamicsbioRxiv, 2019
Low Mutational Load Allows for High Mutation Rate Variation in Gut Commensal Bacteria
2016Transmission DynamicsbioRxiv, 2019
Genomes of a major nosocomial pathogen Enterococcus faecium are shaped by adaptive evolution of the chromosome and plasmidome